STRINGSTRING
R2601_17289 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17289" - Putative outer membrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17289Putative outer membrane protein (603 aa)    
Predicted Functional Partners:
R2601_17284
Uncharacterized protein (1579 aa)
 
  0.992
R2601_17294
Oxidoreductase, FAD-binding protein (363 aa)
 
          0.530
R2601_15322
Uncharacterized protein (221 aa)
   
          0.530
R2601_17017
Uncharacterized protein (114 aa)
   
          0.482
R2601_10117
Transglycosylase SLT domain protein (158 aa)
 
          0.456
R2601_17299
UDP-glucose 4-epimerase (301 aa)
              0.444
dksA
RNA polymerase-binding transcription factor DksA ; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters (140 aa)
   
          0.422
R2601_23785
Uncharacterized protein (258 aa)
   
          0.416
R2601_13759
Uncharacterized protein (88 aa)
   
          0.415
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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