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R2601_17299 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17299" - UDP-glucose 4-epimerase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17299UDP-glucose 4-epimerase (301 aa)    
Predicted Functional Partners:
R2601_06103
Putative NAD dependent epimerase/dehydratase (318 aa)
 
   
    0.853
R2601_17294
Oxidoreductase, FAD-binding protein (363 aa)
              0.840
R2601_15547
UDP-glucose 4-epimerase (327 aa)
 
   
 
0.839
R2601_15552
UDP-glucose pyrophosphorylase (297 aa)
   
   
    0.829
R2601_14345
Oxidoreductase, Gfo/Idh/MocA family protein (699 aa)
       
    0.749
R2601_13689
Nucleotide sugar epimerase/dehydratase (628 aa)
 
   
    0.683
R2601_24879
UDP-glucose pyrophosphorylase (303 aa)
   
   
    0.611
R2601_14335
Glycosyl transferase, group 1 family protein (411 aa)
 
 
      0.572
R2601_26106
Glycosyl transferase, group 1 (376 aa)
 
 
      0.558
R2601_15175
Glycosyl transferase, group 1 family protein (400 aa)
 
 
      0.538
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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