STRINGSTRING
R2601_17314 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17314" - Abortive infection protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17314Abortive infection protein (490 aa)    
Predicted Functional Partners:
R2601_17599
Uncharacterized protein (225 aa)
   
          0.554
R2601_21256
Possible outer membrane protein (199 aa)
   
          0.549
cpdB
2’,3’-cyclic nucleotide 2’-phosphodiesterase/3’-nucleotidase bifunctional periplasmic protein (81 aa)
              0.500
R2601_07118
Uncharacterized protein (193 aa)
   
          0.500
R2601_17569
Uncharacterized protein (640 aa)
   
          0.448
R2601_16095
Uncharacterized protein (177 aa)
   
          0.426
R2601_13649
Uncharacterized protein (115 aa)
   
          0.410
R2601_10799
Uncharacterized protein (106 aa)
   
          0.404
R2601_11906
Uncharacterized protein (102 aa)
   
          0.402
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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