STRINGSTRING
R2601_17469 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17469" - Putative transcription regulator protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17469Putative transcription regulator protein (283 aa)    
Predicted Functional Partners:
R2601_17474
Putative periplasmic binding abc transporter protein (334 aa)
 
     
  0.954
R2601_17499
Uncharacterized protein (464 aa)
 
     
  0.941
R2601_17464
Short chain dehydrogenase (700 aa)
 
     
  0.938
R2601_17489
Putative permease abc transporter protein (330 aa)
 
     
  0.889
rhaM
Type-3 mutarotase ; Involved in the anomeric conversion of L-rhamnose (106 aa)
 
          0.855
R2601_17484
Putative permease abc transporter protein (327 aa)
 
     
  0.838
R2601_17479
Ribose import ATP-binding protein RbsA ; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system (513 aa)
 
          0.765
R2601_11059
Thioredoxin (305 aa)
       
      0.653
R2601_02628
Short chain dehydrogenase (392 aa)
 
     
  0.637
R2601_17454
Rhamnulose-1-phosphate aldolase (280 aa)
              0.622
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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