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R2601_17704 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17704" - Transcriptional regulator, TetR family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17704Transcriptional regulator, TetR family protein (196 aa)    
Predicted Functional Partners:
R2601_17709
Uncharacterized protein (95 aa)
              0.640
R2601_17714
Beta-lactamase (297 aa)
              0.627
R2601_16670
Alkyl hydroperoxide reductase AhpD ; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (189 aa)
   
          0.609
R2601_24215
Paraquat-inducible protein A, putative (155 aa)
   
          0.564
R2601_17719
Homoserine dehydrogenase (428 aa)
              0.446
R2601_17529
Uncharacterized protein (215 aa)
   
          0.430
R2601_26441
Uncharacterized protein (164 aa)
   
          0.401
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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