STRINGSTRING
R2601_17729 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17729" - Antisigma-factor antagonist in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17729Antisigma-factor antagonist (STAS) domain protein (155 aa)    
Predicted Functional Partners:
R2601_17734
Anti-sigma B factor, putative (160 aa)
 
     
  0.955
R2601_14810
Response regulator (415 aa)
 
 
  0.949
cheD
Probable chemoreceptor glutamine deamidase CheD ; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis (174 aa)
   
 
    0.659
R2601_09435
Protein-glutamate methylesterase ; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR (351 aa)
 
 
    0.656
R2601_17724
Acetyl-CoA C-acetyltransferase (390 aa)
              0.641
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
   
 
  0.619
R2601_18715
Chemotaxis multidomain, CheB methylesterase/CheR, Methylase (1154 aa)
   
 
    0.565
R2601_09410
Chemotaxis histidine protein kinase, CheA1 (716 aa)
   
 
    0.552
R2601_18710
Response regulator, hypothetical (127 aa)
   
 
  0.476
R2601_09425
Chemotaxis response regulator, CheY2 (128 aa)
   
 
  0.476
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]