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R2601_17754 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17754" - Ribosomal RNA small subunit methyltransferase E in Pelagibaca bermudensis
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
R2601_17754Ribosomal RNA small subunit methyltransferase E ; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (208 aa)    
Predicted Functional Partners:
R2601_17749
Uncharacterized protein (174 aa)
 
          0.910
ubiA
4-HB polyprenyltransferase ; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate (343 aa)
 
        0.807
R2601_17744
Glutamate--cysteine ligase (456 aa)
 
          0.788
prmA
Ribosomal protein L11 methyltransferase ; Methylates ribosomal protein L11 (292 aa)
 
   
  0.691
R2601_17764
OmpA domain protein (637 aa)
 
          0.609
ahcY
S-adenosyl-L-homocysteine hydrolase ; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine (461 aa)
         
  0.590
ybeY
Endoribonuclease YbeY ; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (160 aa)
 
        0.585
tsaD
tRNA threonylcarbamoyladenosine biosynthesis protein TsaD ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (359 aa)
 
        0.580
rpsU
30S ribosomal protein S21 (68 aa)
 
          0.559
R2601_19599
DNA polymerase III subunit delta (372 aa)
   
        0.559
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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