STRINGSTRING
R2601_17764 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17764" - OmpA domain protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17764OmpA domain protein (637 aa)    
Predicted Functional Partners:
R2601_17769
Uncharacterized protein (110 aa)
 
          0.966
R2601_17749
Uncharacterized protein (174 aa)
 
          0.878
ubiA
4-HB polyprenyltransferase ; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate (343 aa)
 
          0.831
tolB
Protein TolB ; Involved in the TonB-independent uptake of proteins (446 aa)
   
 
  0.809
R2601_22117
Possible outer membrane protein, OmpA family (452 aa)
 
  0.808
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.777
R2601_13819
Uncharacterized protein (272 aa)
   
          0.750
R2601_18278
Uncharacterized protein (341 aa)
   
          0.740
R2601_11444
Flagellar motor protein (634 aa)
   
 
  0.735
R2601_10879
Uncharacterized protein (71 aa)
   
          0.731
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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