STRINGSTRING
R2601_17779 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17779" - Saccharopine dehydrogenase, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17779Saccharopine dehydrogenase, putative (351 aa)    
Predicted Functional Partners:
R2601_17784
Saccharopine dehydrogenase, putative (376 aa)
   
    0.988
R2601_17774
Phosphoglycerate mutase family protein (217 aa)
 
          0.739
R2601_12915
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (87 aa)
   
          0.674
R2601_18278
Uncharacterized protein (341 aa)
   
          0.614
R2601_08993
SURF1 family protein (225 aa)
   
          0.538
R2601_17749
Uncharacterized protein (174 aa)
 
          0.496
R2601_12006
Uncharacterized protein (507 aa)
   
          0.489
R2601_24514
Acyl carrier protein, putative (80 aa)
   
          0.485
R2601_05213
Saccharopine dehydrogenase family protein (417 aa)
       
    0.482
R2601_10214
Cytochrome c-type biogenesis protein CycH (412 aa)
   
          0.480
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]