STRINGSTRING
R2601_17819 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17819" - DNA processing protein DprA, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17819DNA processing protein DprA, putative (375 aa)    
Predicted Functional Partners:
R2601_09952
Competence protein ComM (504 aa)
 
  0.891
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (906 aa)
            0.889
R2601_25246
Competence protein (678 aa)
 
   
  0.794
R2601_14105
DNA repair protein RadC (253 aa)
   
   
  0.729
R2601_14885
Competence protein F (241 aa)
 
 
  0.717
rnhB
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (215 aa)
 
          0.703
R2601_07543
DNA repair protein RadC (168 aa)
   
   
  0.700
rpsB
30S ribosomal protein S2 (255 aa)
 
     
  0.593
R2601_11179
Methionyl-tRNA formyltransferase ; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (221 aa)
 
     
  0.579
R2601_13925
Dihydroorotase (427 aa)
 
          0.569
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]