STRINGSTRING
R2601_17829 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17829" - ErfK/YbiS/YcfS/YnhG family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17829ErfK/YbiS/YcfS/YnhG family protein (186 aa)    
Predicted Functional Partners:
R2601_07093
Uncharacterized protein (90 aa)
   
          0.776
R2601_14855
ErfK/YbiS/YcfS/YnhG family protein (133 aa)
 
          0.686
R2601_17834
3-oxoadipate CoA-succinyl transferase, alpha subunit (234 aa)
              0.571
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (906 aa)
              0.534
R2601_17839
3-oxoadipate CoA-succinyl transferase, beta subunit (201 aa)
              0.531
R2601_14860
Uncharacterized protein (176 aa)
 
          0.491
R2601_25041
Uncharacterized protein (217 aa)
   
          0.485
R2601_09937
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (398 aa)
              0.445
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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