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R2601_17859 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17859" - Polyhydroxyalkanoate depolymerase, intracellular in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17859Polyhydroxyalkanoate depolymerase, intracellular (419 aa)    
Predicted Functional Partners:
R2601_17854
Poly(3-hydroxyalkanoate) polymerase (597 aa)
 
   
  0.986
R2601_16820
Putative poly-beta-hydroxyalkanoate synthase (579 aa)
 
   
  0.964
R2601_05608
Polyhydroxyalkanoate synthesis repressor PhaR (186 aa)
 
     
  0.788
R2601_17849
Phasin, PhaP (148 aa)
 
          0.729
R2601_11861
Acetoacetyl-CoA reductase (240 aa)
 
     
  0.704
R2601_17844
Phasin, PhaP (219 aa)
 
          0.646
R2601_25006
D-beta-hydroxybutyrate dehydrogenase (257 aa)
   
     
  0.637
R2601_17112
Zinc metallopeptidase-like protein (230 aa)
 
          0.527
R2601_12438
Uncharacterized protein (276 aa)
   
          0.478
R2601_15537
Uncharacterized protein (309 aa)
   
          0.437
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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