STRINGSTRING
R2601_17928 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17928" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17928Uncharacterized protein (144 aa)    
Predicted Functional Partners:
R2601_17923
Oxidoreductase, short-chain dehydrogenase/reductase family protein (214 aa)
              0.874
R2601_17918
Uncharacterized protein (152 aa)
              0.859
R2601_17933
Uncharacterized protein (153 aa)
              0.678
R2601_17913
Aspartokinase (412 aa)
              0.599
R2601_23670
Cobalt chelatase, pCobT subunit (625 aa)
   
          0.585
R2601_17938
Putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) (403 aa)
              0.579
R2601_17943
HNH endonuclease family protein (194 aa)
 
          0.569
R2601_17908
Phosphoenolpyruvate-protein phosphotransferase (744 aa)
              0.490
R2601_18643
Glutaredoxin protein (74 aa)
              0.451
R2601_15657
Uncharacterized protein (253 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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