STRINGSTRING
R2601_17943 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17943" - HNH endonuclease family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17943HNH endonuclease family protein (194 aa)    
Predicted Functional Partners:
R2601_09877
Methyltransferase (367 aa)
 
          0.622
R2601_17938
Putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) (403 aa)
              0.611
R2601_23795
Phospholipase/carboxylesterase family protein (430 aa)
 
          0.606
R2601_17928
Uncharacterized protein (144 aa)
 
          0.569
R2601_17933
Uncharacterized protein (153 aa)
     
      0.568
R2601_08928
Helicase, putative (989 aa)
   
 
      0.553
R2601_26041
Segregation and condensation protein B ; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves (256 aa)
   
          0.462
R2601_12670
Uncharacterized protein (112 aa)
   
          0.454
R2601_17744
Glutamate--cysteine ligase (456 aa)
   
          0.452
R2601_24150
Glutamyl-/ glutaminyl-tRNA synthetase (285 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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