STRINGSTRING
R2601_17993 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_17993" - Putative orphan protein putative membrane protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_17993Putative orphan protein putative membrane protein (281 aa)    
Predicted Functional Partners:
R2601_20656
Uncharacterized protein (350 aa)
   
          0.723
R2601_00745
Uncharacterized protein (422 aa)
   
          0.722
R2601_18780
Uncharacterized protein (171 aa)
   
          0.702
R2601_04843
Uncharacterized protein (222 aa)
   
          0.691
R2601_04813
Response regulator receiver-ATP-binding region, ATPase-like-Histidine kinase, HAMP region-Histidine (528 aa)
   
          0.689
R2601_23720
Uncharacterized protein (306 aa)
   
          0.673
R2601_00750
Tetratricopeptide TPR_4 (525 aa)
   
          0.662
R2601_25446
Endonuclease/exonuclease/phosphatase family protein (295 aa)
   
          0.653
R2601_11459
Uncharacterized protein (309 aa)
   
          0.646
R2601_16905
Feruloyl esterase (475 aa)
   
          0.621
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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