STRINGSTRING
R2601_18033 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18033" - Arylsulfatase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18033Arylsulfatase (480 aa)    
Predicted Functional Partners:
R2601_00775
Nonspecific acid phosphatase (323 aa)
 
          0.858
R2601_13020
Sulfatase family protein (101 aa)
   
          0.778
R2601_00740
Uncharacterized protein (668 aa)
 
          0.711
R2601_00745
Uncharacterized protein (422 aa)
 
          0.669
R2601_20234
Choline sulfatase (503 aa)
 
   
0.661
R2601_00750
Tetratricopeptide TPR_4 (525 aa)
 
          0.638
R2601_20259
Uncharacterized protein (267 aa)
 
          0.600
R2601_18028
ISSpo9, transposase (310 aa)
              0.522
R2601_20244
Choline dehydrogenase ; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate (552 aa)
         
  0.464
R2601_10594
Putative alcohol dehydrogenase protein (526 aa)
         
  0.464
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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