STRINGSTRING
R2601_18043 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18043" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18043Uncharacterized protein (304 aa)    
Predicted Functional Partners:
R2601_18038
MobC protein (203 aa)
 
          0.866
R2601_25391
Uncharacterized protein (137 aa)
   
          0.556
R2601_02598
Gamma-butyrobetaine,2-oxoglutarate dioxygenase (379 aa)
   
        0.555
R2601_23885
Uncharacterized protein (145 aa)
   
          0.550
R2601_14015
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein (525 aa)
 
          0.543
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
 
        0.530
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
 
        0.512
R2601_14025
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein (625 aa)
 
          0.466
R2601_20651
Uncharacterized protein (479 aa)
   
          0.457
R2601_18048
Uncharacterized protein (133 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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