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R2601_18118 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18118" - Histone deacetylase superfamily protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18118Histone deacetylase superfamily protein (342 aa)    
Predicted Functional Partners:
R2601_18113
Acetylornithine deacetylase (427 aa)
 
        0.891
R2601_18123
Transcriptional regulator, GntR family protein (239 aa)
              0.866
R2601_19180
NAD-dependent deacetylase (229 aa)
   
  0.721
R2601_19624
Possible ATP-dependent RNA helicase (156 aa)
     
  0.717
R2601_19619
Possible ATP-dependent RNA helicase (978 aa)
     
  0.717
R2601_18128
Class II aldolase/adducin-like protein (256 aa)
     
      0.678
R2601_18153
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein (299 aa)
   
  0.653
R2601_18133
Extracellular solute-binding protein, family 5 (515 aa)
 
          0.634
R2601_18108
Uncharacterized protein (460 aa)
 
          0.616
R2601_00910
Ribose-5-phosphate isomerase B (153 aa)
       
    0.601
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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