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R2601_18163 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18163" - Putative ATP-dependent RNA helicase protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
R2601_18163Putative ATP-dependent RNA helicase protein (430 aa)    
Predicted Functional Partners:
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
   
 
  0.808
eno
2-phosphoglycerate dehydratase ; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (424 aa)
   
 
  0.805
R2601_19150
ATP-dependent helicase HrpB (814 aa)
     
  0.781
R2601_25526
Cold shock family protein (68 aa)
   
  0.777
R2601_23740
Cold shock family protein (68 aa)
   
  0.777
R2601_11324
Cold shock family protein (68 aa)
   
  0.777
rpmD
50S ribosomal protein L30 (62 aa)
     
  0.775
rplA
50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (233 aa)
   
  0.769
R2601_24779
Cold shock DNA-binding domain protein (180 aa)
   
  0.762
rplW
50S ribosomal protein L23 ; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (89 aa)
   
  0.758
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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