STRINGSTRING
R2601_18228 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18228" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18228Uncharacterized protein (169 aa)    
Predicted Functional Partners:
R2601_18223
Putative periplasmic thiol-disulphide interchange protein (DsbA family) (214 aa)
              0.803
R2601_18233
A/G-specific adenine glycosylase (348 aa)
              0.754
R2601_08611
Uncharacterized protein (582 aa)
   
          0.747
R2601_16570
Uncharacterized protein (216 aa)
   
          0.742
R2601_18278
Uncharacterized protein (341 aa)
   
          0.741
R2601_23525
Uncharacterized protein (99 aa)
   
          0.738
tatA
Sec-independent protein translocase protein TatA ; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system (72 aa)
   
          0.737
R2601_25041
Uncharacterized protein (217 aa)
   
          0.716
R2601_17072
Uncharacterized protein (208 aa)
   
          0.702
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.701
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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