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R2601_18233 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18233" - A/G-specific adenine glycosylase in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18233A/G-specific adenine glycosylase (348 aa)    
Predicted Functional Partners:
R2601_15447
DNA polymerase I (935 aa)
 
 
  0.819
R2601_22542
Exodeoxyribonuclease III (260 aa)
     
  0.812
R2601_11074
Exodeoxyribonuclease III, putative (262 aa)
     
  0.778
R2601_18228
Uncharacterized protein (169 aa)
              0.754
R2601_14420
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (372 aa)
   
 
  0.748
sfsA
Sugar fermentation stimulation protein homolog (235 aa)
            0.740
fpg
DNA-(apurinic or apyrimidinic site) lyase MutM ; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (283 aa)
   
 
  0.738
R2601_18223
Putative periplasmic thiol-disulphide interchange protein (DsbA family) (214 aa)
              0.721
R2601_18238
Fatty acid desaturase family protein (381 aa)
              0.693
ung
Uracil-DNA glycosylase ; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (218 aa)
   
 
  0.677
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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