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R2601_18238 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18238" - Fatty acid desaturase family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18238Fatty acid desaturase family protein (381 aa)    
Predicted Functional Partners:
R2601_18233
A/G-specific adenine glycosylase (348 aa)
              0.693
R2601_13759
Uncharacterized protein (88 aa)
   
          0.651
R2601_24450
Alcohol dehydrogenase, zinc-containing (345 aa)
         
  0.650
R2601_26176
Cytochrome P450 family protein (451 aa)
   
   
    0.633
R2601_07966
Alcohol dehydrogenase, iron-containing (383 aa)
     
 
    0.602
R2601_02498
Iron-containing alcohol dehydrogenase (372 aa)
     
 
    0.602
R2601_04353
Alcohol dehydrogenase (345 aa)
         
  0.582
R2601_25791
Enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase (733 aa)
   
          0.577
R2601_19554
Uncharacterized protein (150 aa)
   
          0.560
R2601_18568
Uncharacterized protein (293 aa)
   
          0.553
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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