STRINGSTRING
deoB protein (Pelagibaca bermudensis) - STRING interaction network
"deoB" - Phosphodeoxyribomutase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoBPhosphodeoxyribomutase ; Phosphotransfer between the C1 and C5 carbon atoms of pentose (401 aa)    
Predicted Functional Partners:
R2601_18248
Thymidine phosphorylase (429 aa)
 
 
  0.999
deoD
Purine nucleoside phosphorylase DeoD-type (234 aa)
 
 
  0.996
R2601_16510
Deoxyribose-phosphate aldolase (331 aa)
 
 
  0.993
R2601_18243
Cytidine deaminase (130 aa)
 
   
  0.961
R2601_18258
Adenosine deaminase (333 aa)
              0.874
R2601_00910
Ribose-5-phosphate isomerase B (153 aa)
       
  0.815
prs
Phosphoribosyl pyrophosphate synthase ; Involved in the biosynthesis of ribose 1,5-bisphosphate. Catalyzes the transfer of pyrophosphoryl group from ATP to ribose- 5-phosphate to yield phosphoribosyl diphosphate (PRPP) and AMP (336 aa)
         
  0.809
R2601_17883
5’-methylthioadenosine phosphorylase (291 aa)
       
  0.799
rpiA
Phosphoriboisomerase A ; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (260 aa)
       
  0.793
R2601_20781
Ribose kinase protein (296 aa)
     
 
  0.792
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (8%) [HD]