STRINGSTRING
R2601_18303 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18303" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18303Uncharacterized protein (258 aa)    
Predicted Functional Partners:
R2601_23388
Uncharacterized protein (158 aa)
   
          0.778
R2601_24120
DNA-binding response regulator CtrA (57 aa)
   
          0.773
R2601_15145
Uncharacterized protein (166 aa)
   
          0.765
R2601_15497
Exonuclease, putative (204 aa)
   
          0.763
lysS
Lysyl-tRNA synthetase (525 aa)
   
          0.763
R2601_26891
Uncharacterized protein (217 aa)
   
          0.761
recO
Recombination protein O ; Involved in DNA repair and RecF pathway recombination (242 aa)
   
          0.760
bamD
Outer membrane protein assembly factor BamD ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (275 aa)
   
          0.755
nadK
ATP-dependent NAD kinase ; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2’-hydroxyl of the adenosine moiety of NAD to yield NADP (253 aa)
   
          0.745
R2601_14650
Transporter, Tim44 family protein (219 aa)
   
          0.744
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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