STRINGSTRING
R2601_18313 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18313" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18313Uncharacterized protein ; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (66 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR ; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (197 aa)
   
   
  0.831
ispDF
Bifunctional enzyme IspD/IspF ; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (378 aa)
   
        0.614
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
              0.538
murE
UDP-N-acetylmuramyl-tripeptide synthetase (494 aa)
   
        0.518
gpt
Xanthine-guanine phosphoribosyltransferase ; Acts on guanine, xanthine and to a lesser extent hypoxanthine (174 aa)
 
        0.503
R2601_17304
DNA polymerase III subunits gamma and tau (588 aa)
   
   
  0.495
tig
PPIase ; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (443 aa)
 
        0.492
R2601_13609
Hypothetical 132 kDa HIT-like protein in hisE 3’region (122 aa)
   
        0.463
R2601_17868
Adenine phosphoribosyltransferase ; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis (171 aa)
   
        0.462
R2601_24534
Glyceraldehyde-3-phosphate dehydrogenase, type I (335 aa)
   
        0.461
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (18%) [HD]