STRINGSTRING
R2601_18348 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18348" - Transcriptional regulator SoxR in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18348Transcriptional regulator SoxR (114 aa)    
Predicted Functional Partners:
R2601_18353
Regulatory protein SoxS (148 aa)
 
          0.931
R2601_18343
YeeE/YedE family protein (352 aa)
 
          0.786
R2601_18358
Sulfur oxidation V protein (245 aa)
         
  0.671
R2601_18528
YeeE/YedE family protein (145 aa)
 
          0.663
R2601_18533
YeeE/YedE family protein (141 aa)
 
          0.656
R2601_18363
Thioredoxin SoxW (194 aa)
 
          0.648
R2601_16335
Uncharacterized protein (557 aa)
         
  0.608
R2601_27141
Dihydropteroate synthase, DHPS-Homocysteine S-methyltransferase-Cobalamin-dependent methionine (1256 aa)
         
  0.607
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
   
   
  0.606
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
   
   
  0.606
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]