STRINGSTRING
R2601_18363 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18363" - Thioredoxin SoxW in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18363Thioredoxin SoxW (194 aa)    
Predicted Functional Partners:
R2601_18353
Regulatory protein SoxS (148 aa)
 
          0.934
R2601_18368
Monoheme cytochrome c SoxX (157 aa)
 
          0.933
R2601_18373
Sulfur oxidation protein SoxY (139 aa)
 
          0.925
R2601_18378
Sulfur oxidation Z protein (109 aa)
 
          0.875
R2601_18343
YeeE/YedE family protein (352 aa)
 
          0.863
R2601_18383
Thiosulfate-oxidizing multienzyme system protein SoxA (280 aa)
 
     
  0.857
R2601_18388
Sulfur oxidation B protein (565 aa)
 
          0.836
R2601_18358
Sulfur oxidation V protein (245 aa)
 
     
  0.834
R2601_18398
Diheme cytochrome c SoxD (408 aa)
 
          0.832
R2601_18393
Sulfur oxidation molybdopterin C protein (425 aa)
 
          0.828
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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