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R2601_18483 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18483" - Branched-chain amino acid ABC transporter, permease protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18483Branched-chain amino acid ABC transporter, permease protein (400 aa)    
Predicted Functional Partners:
R2601_18488
Branched-chain amino acid ABC transporter, permease protein (343 aa)
 
  0.997
R2601_18478
Branched-chain amino acid ABC transporter, ATP-binding protein (251 aa)
 
  0.996
R2601_18473
Branched-chain amino acid ABC transporter, ATP-binding protein (251 aa)
 
  0.996
R2601_18493
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein (448 aa)
 
   
    0.985
R2601_10719
Inner-membrane translocator (306 aa)
 
  0.985
R2601_01953
Putative ABC transporter, permease protein (289 aa)
 
  0.980
R2601_20621
Hydrophobic amino acid ABC transporter (HAAT) family, permease protein (289 aa)
 
  0.979
R2601_00660
Branched-chain amino acid ABC transporter, permease protein (295 aa)
 
  0.978
R2601_24824
Branched-chain amino acid ABC transporter, permease protein (336 aa)
 
 
  0.970
R2601_21907
Branched-chain amino acid ABC transporter, ATP-binding protein (233 aa)
 
  0.967
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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