STRINGSTRING
R2601_18498 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18498" - Transcriptional regulator, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18498Transcriptional regulator, putative (436 aa)    
Predicted Functional Partners:
R2601_18513
Sensor histidine kinase (891 aa)
 
          0.711
R2601_18278
Uncharacterized protein (341 aa)
   
          0.702
R2601_24514
Acyl carrier protein, putative (80 aa)
   
          0.698
R2601_17849
Phasin, PhaP (148 aa)
   
          0.671
R2601_17844
Phasin, PhaP (219 aa)
   
          0.671
R2601_16675
Acetyltransferase, GNAT family protein (242 aa)
   
          0.667
ftsQ
Cell division protein FtsQ ; Essential cell division protein (299 aa)
   
          0.666
R2601_05668
Uncharacterized protein (147 aa)
   
          0.636
R2601_18503
Response regulator (119 aa)
 
          0.623
R2601_09977
Uncharacterized protein (396 aa)
   
          0.619
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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