STRINGSTRING
R2601_18508 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18508" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18508Uncharacterized protein (101 aa)    
Predicted Functional Partners:
R2601_18513
Sensor histidine kinase (891 aa)
              0.869
R2601_18503
Response regulator (119 aa)
              0.859
R2601_24480
Uncharacterized protein (272 aa)
   
          0.759
R2601_10484
Uncharacterized protein (163 aa)
   
          0.755
R2601_10799
Uncharacterized protein (106 aa)
   
          0.735
R2601_26581
Uncharacterized protein (53 aa)
   
          0.687
R2601_05923
Cobalamin biosynthesis domain protein (119 aa)
   
          0.646
R2601_21256
Possible outer membrane protein (199 aa)
   
          0.638
R2601_25611
Outer membrane transporter, OMPP1/FadL/TodX family protein (384 aa)
   
          0.632
R2601_18518
Possible flagellar switch protein FliM (396 aa)
              0.611
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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