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R2601_18533 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18533" - YeeE/YedE family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18533YeeE/YedE family protein (141 aa)    
Predicted Functional Partners:
R2601_18528
YeeE/YedE family protein (145 aa)
 
          0.973
R2601_18523
Uncharacterized protein (141 aa)
 
          0.884
R2601_18538
Metallo-beta-lactamase family protein (288 aa)
 
     
  0.883
R2601_12810
Beta-lactamase-like protein (291 aa)
 
     
  0.693
R2601_18348
Transcriptional regulator SoxR (114 aa)
 
          0.656
R2601_16335
Uncharacterized protein (557 aa)
 
          0.637
R2601_12630
Transcriptional regulator, ArsR family protein (96 aa)
 
          0.583
R2601_05133
SirA family protein (87 aa)
   
   
  0.534
R2601_27208
Rhodanese-related sulfurtransferase (133 aa)
              0.451
R2601_25701
Rhodanese-like domain protein (120 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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