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R2601_18598 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18598" - Possible CoA-transferase family III protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18598Possible CoA-transferase family III protein (56 aa)    
Predicted Functional Partners:
R2601_18603
Uncharacterized protein (95 aa)
              0.859
R2601_18593
Xaa-Pro dipeptidase (464 aa)
 
          0.717
R2601_18588
Uncharacterized protein (449 aa)
 
          0.710
R2601_18608
Uncharacterized protein (597 aa)
              0.605
R2601_20044
Uncharacterized protein (126 aa)
   
          0.509
R2601_06153
Uncharacterized protein (171 aa)
   
          0.484
R2601_02428
Uncharacterized protein (115 aa)
   
          0.445
R2601_04058
Probable integral membrane efflux protein (413 aa)
   
          0.415
R2601_18583
Putative integral membrane protein (129 aa)
              0.411
R2601_03663
Uncharacterized protein (137 aa)
   
          0.404
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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