STRINGSTRING
R2601_18608 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18608" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18608Uncharacterized protein (597 aa)    
Predicted Functional Partners:
R2601_18603
Uncharacterized protein (95 aa)
              0.605
R2601_18598
Possible CoA-transferase family III protein (56 aa)
              0.605
R2601_27111
Uncharacterized protein (141 aa)
   
          0.535
R2601_18588
Uncharacterized protein (449 aa)
 
          0.534
R2601_18593
Xaa-Pro dipeptidase (464 aa)
 
          0.528
R2601_22372
Uncharacterized protein (99 aa)
   
          0.522
R2601_27101
Uncharacterized protein (437 aa)
   
          0.486
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
   
   
    0.478
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1378 aa)
   
   
    0.467
R2601_12545
Uncharacterized protein (137 aa)
   
          0.404
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (6%) [HD]