STRINGSTRING
R2601_18720 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18720" - PAS in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18720PAS (182 aa)    
Predicted Functional Partners:
R2601_18715
Chemotaxis multidomain, CheB methylesterase/CheR, Methylase (1154 aa)
 
 
  0.980
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
 
  0.976
R2601_18710
Response regulator, hypothetical (127 aa)
 
  0.976
R2601_09425
Chemotaxis response regulator, CheY2 (128 aa)
   
  0.834
R2601_09405
Chemotaxis response regulator, CheY1 (124 aa)
   
  0.834
R2601_13005
Two-component response regulator (213 aa)
       
  0.661
R2601_06143
Putative two-component response regulator (209 aa)
       
  0.661
R2601_26256
Nitrogen regulation protein NtrC (457 aa)
   
  0.655
R2601_26246
Nitrogen assimilation regulatory protein NtrX (472 aa)
   
  0.655
R2601_24465
C4-dicarboxylate transport transcriptional regulatory protein DctD (440 aa)
   
  0.655
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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