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R2601_18750 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18750" - ABC spermidine/putrescine transporter, inner membrane subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18750ABC spermidine/putrescine transporter, inner membrane subunit (279 aa)    
Predicted Functional Partners:
R2601_18745
ABC spermidine/putrescine transporter, inner membrane subunit (304 aa)
   
    0.983
R2601_18740
ABC spermidine/putrescine transporter, periplasmic binding protein (424 aa)
 
   
    0.963
R2601_18735
ABC spermidine/putrescine transporter, ATPase subunit (325 aa)
 
   
    0.951
R2601_18755
HyuE hydantoin racemase (213 aa)
 
          0.950
R2601_17539
Uncharacterized protein (285 aa)
   
    0.745
R2601_01070
ABC transporter permease protein (305 aa)
   
    0.744
R2601_11414
ABC putrescine transporter, inner membrane subunit (306 aa)
   
    0.732
R2601_13289
Putrescine ABC transporter, permease protein (296 aa)
   
    0.704
R2601_27011
Probable spermidineputrescine ABC transporter permease protein (328 aa)
   
    0.682
R2601_20401
Spermidine/putrescine ABC transporter, permease protein (288 aa)
 
          0.664
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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