STRINGSTRING
R2601_18825 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18825" - Transglutaminase-like domain in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18825Transglutaminase-like domain (1142 aa)    
Predicted Functional Partners:
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
       
    0.990
R2601_18388
Sulfur oxidation B protein (565 aa)
       
    0.980
R2601_12655
Ser/Thr protein phosphatase/nucleotidase, putative (519 aa)
       
    0.980
R2601_18830
Uncharacterized protein (798 aa)
 
        0.977
R2601_18835
Putative transglutaminase-like protein (294 aa)
 
       
0.901
R2601_09455
Uncharacterized protein (317 aa)
 
        0.872
R2601_09460
Uncharacterized protein (474 aa)
 
        0.859
R2601_08286
Glutamine amidotransferase (244 aa)
       
    0.836
R2601_05628
Glutamine amidotransferase, class I (226 aa)
       
    0.836
R2601_23445
Uncharacterized protein (321 aa)
 
        0.836
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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