STRINGSTRING
R2601_18930 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18930" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18930Uncharacterized protein (242 aa)    
Predicted Functional Partners:
R2601_18925
Probable lactoylglutathione lyase (144 aa)
              0.861
R2601_11289
Uncharacterized protein (134 aa)
   
          0.640
R2601_12393
Uncharacterized protein (224 aa)
   
          0.590
R2601_09013
Uncharacterized protein (275 aa)
   
          0.589
thyX
Thymidylate synthase ThyX ; Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate (304 aa)
              0.560
R2601_26646
TRAP dicarboxylate transporter, DctQ subunit (190 aa)
   
          0.559
R2601_05108
Uncharacterized protein (63 aa)
   
          0.533
R2601_09777
Lipoprotein, putative (226 aa)
   
          0.528
R2601_26241
Lipoprotein, putative (202 aa)
   
          0.516
R2601_18403
Lipoprotein, putative (218 aa)
   
          0.509
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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