STRINGSTRING
R2601_18950 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18950" - Aspartate aminotransferase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18950Aspartate aminotransferase (400 aa)    
Predicted Functional Partners:
R2601_12990
Glutamate synthase, large subunit (1537 aa)
   
  0.987
R2601_17913
Aspartokinase (412 aa)
   
  0.984
R2601_07871
Aspartate kinase (463 aa)
   
  0.983
R2601_10759
Succinate dehydrogenase flavoprotein subunit (601 aa)
     
 
  0.980
R2601_10489
Prephenate dehydratase (277 aa)
 
 
  0.943
R2601_15377
Prephenate dehydrogenase (302 aa)
       
  0.893
R2601_14750
NADP-dependent malic enzyme (751 aa)
 
  0.893
R2601_17719
Homoserine dehydrogenase (428 aa)
 
  0.889
R2601_10082
Malic enzyme (759 aa)
   
  0.880
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
 
  0.878
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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