STRINGSTRING
R2601_18960 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18960" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18960Uncharacterized protein (132 aa)    
Predicted Functional Partners:
R2601_18950
Aspartate aminotransferase (400 aa)
              0.870
R2601_18955
Bleomycin resistance protein (121 aa)
              0.859
R2601_13960
Uncharacterized protein (116 aa)
   
          0.777
R2601_27171
Uncharacterized protein (336 aa)
   
          0.776
R2601_25986
Uncharacterized protein (322 aa)
   
          0.776
R2601_15532
Core-2/I-branching enzyme family protein (566 aa)
   
          0.776
R2601_17334
Uncharacterized protein (156 aa)
   
          0.773
R2601_19584
Endonuclease/exonuclease/phosphatase family protein (333 aa)
   
          0.772
R2601_13614
EpsK domain protein (525 aa)
   
          0.772
R2601_13759
Uncharacterized protein (88 aa)
   
          0.769
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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