STRINGSTRING
R2601_18975 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18975" - Uncharacterized protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18975Uncharacterized protein (126 aa)    
Predicted Functional Partners:
R2601_18980
Rhomboid family protein (247 aa)
              0.867
R2601_04943
S-(hydroxymethyl)glutathione dehydrogenase (375 aa)
       
  0.848
R2601_02018
S-(hydroxymethyl)glutathione dehydrogenase (387 aa)
       
  0.848
R2601_21777
ATP synthase subunit E (382 aa)
       
    0.769
R2601_18985
Bifunctional protein PutA ; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1142 aa)
              0.634
R2601_18990
Proline dehydrogenase transcriptional activator (162 aa)
              0.482
R2601_04948
S-formylglutathione hydrolase ; Serine hydrolase involved in the detoxification of formaldehyde (274 aa)
       
    0.478
tdh
L-threonine 3-dehydrogenase (345 aa)
   
 
    0.438
R2601_21442
L-iditol 2-dehydrogenase (342 aa)
   
 
    0.438
R2601_20244
Choline dehydrogenase ; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate (552 aa)
   
 
    0.421
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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