STRINGSTRING
R2601_18980 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_18980" - Rhomboid family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_18980Rhomboid family protein (247 aa)    
Predicted Functional Partners:
R2601_18975
Uncharacterized protein (126 aa)
              0.867
R2601_18985
Bifunctional protein PutA ; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1142 aa)
   
        0.818
R2601_12990
Glutamate synthase, large subunit (1537 aa)
     
   
  0.690
R2601_18990
Proline dehydrogenase transcriptional activator (162 aa)
     
      0.556
R2601_18268
Uracil phosphoribosyltransferase ; Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate (165 aa)
   
    0.545
R2601_22267
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (183 aa)
     
      0.543
R2601_22262
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (168 aa)
     
      0.543
R2601_05593
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (343 aa)
   
      0.538
tuf
Elongation factor Tu ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (391 aa)
     
        0.493
R2601_09677
Translation elongation factor Tu (177 aa)
     
        0.493
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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