STRINGSTRING
R2601_19070 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19070" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19070Uncharacterized protein (79 aa)    
Predicted Functional Partners:
R2601_14805
Hpt domain protein (111 aa)
   
          0.644
hisB
Imidazoleglycerol-phosphate dehydratase (195 aa)
              0.634
R2601_11219
Universal stress family protein (152 aa)
   
          0.595
R2601_27061
RDD family protein (149 aa)
   
          0.591
R2601_17107
Uncharacterized protein (106 aa)
   
          0.577
R2601_25476
Usg, putative (89 aa)
   
          0.545
R2601_12770
Uncharacterized protein (253 aa)
 
          0.544
R2601_12775
Membrane protein (301 aa)
 
          0.529
R2601_05158
Uncharacterized protein (171 aa)
   
          0.528
R2601_21802
Uncharacterized protein (117 aa)
   
          0.497
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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