STRINGSTRING
R2601_19110 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19110" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19110Uncharacterized protein (344 aa)    
Predicted Functional Partners:
R2601_19120
Uncharacterized protein (475 aa)
 
   
  0.963
R2601_19115
Acetyltransferase, GNAT family protein (143 aa)
              0.867
mepA
Penicillin-insensitive murein endopeptidase (306 aa)
   
          0.749
R2601_08943
Putative Esterase/lipase/thioesterase (323 aa)
   
          0.694
R2601_19130
Hydrolase, NUDIX family protein (159 aa)
 
          0.630
R2601_25041
Uncharacterized protein (217 aa)
   
          0.614
R2601_19105
Uncharacterized protein (233 aa)
              0.600
R2601_07108
ErfK/YbiS/YcfS/YnhG (151 aa)
   
          0.590
R2601_14270
Uncharacterized protein (205 aa)
   
          0.573
R2601_18298
Ribonuclease T2 family protein (207 aa)
   
          0.564
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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