STRINGSTRING
R2601_19150 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19150" - ATP-dependent helicase HrpB in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19150ATP-dependent helicase HrpB (814 aa)    
Predicted Functional Partners:
R2601_08706
30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (553 aa)
   
  0.898
fusA
Elongation factor G ; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (707 aa)
     
  0.844
R2601_11009
Polyribonucleotide nucleotidyltransferase (250 aa)
     
  0.811
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
 
 
  0.811
R2601_21106
Putative TonB dependent Vitamin B12 outer membrane receptor (620 aa)
   
 
      0.791
R2601_26996
ATP-dependent RNA helicase RhlE (502 aa)
     
  0.781
R2601_21071
ATP-dependent RNA helicase, DEAD/DEAH box family protein (727 aa)
     
  0.781
R2601_18163
Putative ATP-dependent RNA helicase protein (430 aa)
     
  0.781
R2601_08928
Helicase, putative (989 aa)
     
  0.781
rnd
Ribonuclease D ; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides (385 aa)
 
  0.775
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]