STRINGSTRING
R2601_19255 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19255" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19255Uncharacterized protein (367 aa)    
Predicted Functional Partners:
R2601_19260
Uncharacterized protein (150 aa)
              0.697
R2601_11314
ABC transporter, ATP-binding protein (551 aa)
 
   
  0.612
R2601_22292
ABC transporter, ATP-binding protein (608 aa)
 
   
  0.611
R2601_21657
Uncharacterized protein (398 aa)
   
 
  0.579
R2601_12830
Uncharacterized protein (256 aa)
 
          0.560
R2601_24674
ABC transporter, ATP-binding protein (619 aa)
   
   
  0.559
R2601_08776
Uncharacterized protein (289 aa)
   
          0.492
R2601_05593
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (343 aa)
   
 
  0.490
R2601_19250
Quinone oxidoreductase, putative (328 aa)
              0.454
R2601_15527
Uncharacterized protein (475 aa)
   
          0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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