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glyQ protein (Pelagibaca bermudensis) - STRING interaction network
"glyQ" - Glycyl-tRNA synthetase alpha subunit in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glyQGlycyl-tRNA synthetase alpha subunit (309 aa)    
Predicted Functional Partners:
glyS
Glycyl-tRNA synthetase beta subunit (741 aa)
  0.999
ileS
Isoleucyl-tRNA synthetase ; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (996 aa)
 
   
  0.797
R2601_19342
Uncharacterized protein (171 aa)
              0.782
pyrF
OMP decarboxylase ; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP) (235 aa)
   
        0.624
pheT
Phenylalanyl-tRNA synthetase beta subunit (798 aa)
   
   
  0.622
R2601_19352
Peptidoglycan binding domain protein (579 aa)
              0.615
rpsP
30S ribosomal protein S16 (124 aa)
   
 
  0.610
proS
Prolyl-tRNA synthetase ; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) (445 aa)
 
   
  0.600
R2601_11244
Peptidase, family S49 (265 aa)
 
        0.598
rpoH
RNA polymerase sigma-32 factor (298 aa)
 
 
  0.598
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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