STRINGSTRING
R2601_19367 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19367" - GntP family transporter in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19367GntP family transporter (461 aa)    
Predicted Functional Partners:
R2601_25006
D-beta-hydroxybutyrate dehydrogenase (257 aa)
   
  0.623
R2601_19362
LrgB-like protein (241 aa)
              0.596
R2601_19357
LrgA (116 aa)
              0.596
R2601_10107
MaoC domain protein (151 aa)
 
          0.590
R2601_08511
D-beta-hydroxybutyrate dehydrogenase (248 aa)
   
  0.585
R2601_19372
Ketol-acid reductoisomerase (64 aa)
              0.525
R2601_17499
Uncharacterized protein (464 aa)
         
  0.502
R2601_17097
Xylulokinase (483 aa)
         
  0.502
R2601_02638
Putative L-xylulose kinase protein (512 aa)
         
  0.502
R2601_00960
Carbohydrate kinase, FGGY (535 aa)
         
  0.502
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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