STRINGSTRING
ilvC protein (Pelagibaca bermudensis) - STRING interaction network
"ilvC" - Alpha-keto-beta-hydroxylacyl reductoisomerase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ilvCAlpha-keto-beta-hydroxylacyl reductoisomerase (340 aa)    
Predicted Functional Partners:
ilvD
Dihydroxy-acid dehydratase (609 aa)
 
  0.999
R2601_01718
Dihydroxy-acid dehydratase (577 aa)
 
  0.999
R2601_05743
Dihydroxy-acid dehydratase protein (581 aa)
 
  0.999
R2601_05298
Dihydroxy-acid dehydratase (598 aa)
 
  0.999
R2601_21602
Acetolactate synthase small subunit (187 aa)
 
  0.999
R2601_21612
Acetolactate synthase (575 aa)
 
 
  0.999
R2601_23081
Acetolactate synthase, large subunit, putative (563 aa)
 
 
  0.998
R2601_00670
Uncharacterized protein (576 aa)
 
 
  0.996
R2601_06463
Acetolactate synthase large subunit (526 aa)
   
 
  0.988
R2601_21647
Phosphogluconate dehydratase (601 aa)
 
  0.985
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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