STRINGSTRING
R2601_19427 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19427" - GatB/YqeY domain protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19427GatB/YqeY domain protein (155 aa)    
Predicted Functional Partners:
carA
Carbamoyl-phosphate synthetase glutamine chain (379 aa)
              0.725
hrcA
Heat-inducible transcription repressor HrcA ; Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons (354 aa)
 
          0.529
R2601_07776
Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase (194 aa)
 
        0.524
dnaK
Heat shock protein 70 ; Acts as a chaperone (642 aa)
     
      0.501
rpoD
Sigma-70 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (661 aa)
   
        0.473
R2601_09947
RNA polymerase sigma factor (292 aa)
   
        0.473
rpoH
RNA polymerase sigma-32 factor (298 aa)
   
        0.473
R2601_00375
RNA polymerase sigma factor protein (Sigma-70) (249 aa)
   
        0.473
rpsU
30S ribosomal protein S21 (68 aa)
   
   
  0.473
R2601_26906
Dihydrolipoyl dehydrogenase (464 aa)
   
   
    0.464
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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