STRINGSTRING
R2601_19442 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19442" - Putative Metallo-phosphoesterase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19442Putative Metallo-phosphoesterase (249 aa)    
Predicted Functional Partners:
R2601_22057
Serine/Threonine protein kinase (707 aa)
   
  0.835
R2601_16115
Serine/threonine protein kinase (445 aa)
   
  0.835
R2601_11896
TPR domain protein (574 aa)
     
  0.713
R2601_22267
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (183 aa)
     
  0.666
R2601_22262
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (168 aa)
     
  0.666
R2601_24744
Uncharacterized protein (615 aa)
   
  0.627
R2601_24330
Peptidylprolyl isomerase (408 aa)
   
  0.627
R2601_14125
Peptidylprolyl isomerase (286 aa)
   
  0.627
R2601_19437
Uncharacterized protein (165 aa)
              0.616
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (278 aa)
   
 
  0.611
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]